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How many types of HPV are there

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Last updated

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Date created

Mar 1, 2020

Cards (316)

Section 1

(50 cards)

How many types of HPV are there

Front

Over 170

Back

S

Front

Number of susceptible people

Back

% of latent syphilis that leads to tertiary syphilis

Front

28

Back

Chlamydia in the US

Front

Higher in women More concentrated in bible belt Increasing number of cases Chlamydia trachomatis

Back

Viral STIs

Front

Herpes simplex (HSV) HIV HPV

Back

Differential Equations

Front

Express how much a system changes over time. Used to calculate size of a system at different times. Can be used to predict course of an epidemic.

Back

How is HPV transmitted

Front

Sexual contact Non sexual routes

Back

Those most at risk for syphilis

Front

MSM (50%) cases Men who have sex with men and women MSW Women

Back

R

Front

people in the state of recovery

Back

Gamma

Front

Rate of recovery Rate at which recover from infection per day Cure Estimated directly from a cohort of infected people Not dependent on number of infected people

Back

Secondary syphilis

Front

Disseminated rash Generalized lymph

Back

%of latent syphilis that leads to no further complications

Front

72

Back

When does an epidemic peak?

Front

When the proportion of people who are still susceptible is equal to R0

Back

Not sexual routes of STI

Front

Vertical transmission IDU Phomites

Back

What do differential equations represent

Front

rate of change

Back

3 Broad definitions of sexual contact

Front

Vaginal intercourse Anal intercourse Oral intercourse

Back

Primary Syphilis

Front

Chancre at site of infection

Back

Lambda

Front

Force of infection/ effective contact parameter Probability susceptible person gets infected The force of infection Probability a susceptible individual acquires infection per unit time estimated directly from a cohort of susceptible people Dependent on beta, c, and dependency Probability of infection depends on number of people who are infected

Back

Complications with chlamydia

Front

ectopic pregnancy infertility

Back

Which strains of HPV cause the majority of worldwide cervical cancers

Front

HPV 16 (54%) HPV 18 (13%)

Back

R0 using SIR model

Front

lambda at t0 *1/gamma Also known as Rt will always decrease over the course of an epidemic due to depletion of susceptibles

Back

2 Types of Anal intercourse

Front

receptive insertive

Back

How many types of HPV are oncogenic

Front

15 to 20

Back

HSV 2

Front

more common genital herpes

Back

Course of Syphilis Infection

Front

Infection Primary Secondary Latent Tertiary

Back

SIR Model

Front

susceptible, infected, recovered Divide population into compartments, susceptible, infectious, recovered. Reflect rate at which flow between those boxes

Back

Population structure in SIR model

Front

assume homogenous mixing since it is a compartmental model, assume same chance of contact with infected people account for heterogeneity by adding more compartments

Back

The most common STI

Front

Chlamydia

Back

Tertiary syphilis

Front

Cardiovascular syphilis Late neuro complications

Back

HSV 1

Front

more common oral herpes

Back

Syphilis in the US

Front

Trepomena palladium Higher in males, growing number of cases now

Back

Negative lambda

Front

As incident cases occur, people leave susceptibles

Back

Which strains of HPV are most often associated with genital warts

Front

HPV 6 HPV 11

Back

Today, do men or women have higher rates in syphilis?

Front

Men Driven by high risk populations

Back

Why is syphilis less common

Front

less infectious more common in high turnover people High risk groups

Back

Types of STI

Front

Bacterial Viral

Back

Herpes Simplex

Front

Common virus Carrier states that can reactivate Sores arise when transmissible Can be vertically transmitted

Back

HPV structure

Front

non enveloped double stranded DNA virus

Back

Latent Syphilis

Front

Non replicating and non infectious a majority of cases

Back

How many incident cases Chlamydia per year

Front

2 to 3 million BUT 1.6 million diagnosed

Back

# of Americans that have had herpes

Front

1/6 or 40 M Most are asymptomatic carriers

Back

Infection with syphilis

Front

Growth of organism at site of infection Dissemination into tissues including CNS

Back

% of women with asymptomatic chlamydia

Front

50% Often diagnosed more

Back

Which stages of syphilis are more reported because they indicate incident infections

Front

primary and secondary

Back

How many types of HPV are anogenital

Front

30 to 40

Back

% of men with asymptomatic chlamydia

Front

30

Back

STI

Front

Infection transmitted through sexual contact

Back

Bacterial STIs

Front

chlamydia, gonorrhea, syphilis

Back

Why are STI rates high in alaska

Front

Small networks young population

Back

Global distribution of HPV

Front

worldwide 10% high prevalence and cancers in africa and south america

Back

Section 2

(50 cards)

Phase 2 sti epidemics

Front

hyper-endemic mass media campaigns screening and tx services partner notification community level behavioral interventions continued outreach to high risk

Back

Re-emerging infectious disease

Front

infectious agents that have been known for some time, were no longer considered public problems, and are now showing upward trends in incidence and or public health concern ex. new problem gonorrhea resistant to antibiotics

Back

Examples of reemerging infectious diseases

Front

measles dengue antibiotic resistant gonorrhea

Back

Crabs

Front

evolved to grab on thick hair prevention could be shaving Doesnt survive long not on body, can be transmitted on towels and sheets

Back

Trichomoniasis

Front

protozoan causes vaginitis Causes inflammation in women and discharge Common for those with immunosuppression or HIV otherwise asymptomatic

Back

Where do reemerging diseases tend to come from

Front

animals emerge at intersection of animal an human populations

Back

Transitional concurrency

Front

overlap between partnerships 1 partnership starts before another resolves

Back

Ways to frame STI control Strategies

Front

Ro level of intervention sti epidemic phases

Back

Immunity to HPV

Front

type specific can be infected with multiple types, increase risk of cancer

Back

Components

Front

a group of connected nodes in a network

Back

Why are STIs a problem for reproductive numbers

Front

exposure not random determined by sex networks different rates of transmission

Back

Determinants of extent of STI transmission in a network

Front

size, number, and fragility of components

Back

phase 3 and 4 sti epidemics

Front

decline and endemic continued health promotion vaccine primary prevention screening and treatment partner notification continued high risk outreach

Back

Interventions to impact rate of partner acquisition, c, for STD

Front

programs to reduce rates of partner change employment programs for sex workers reduce concurrent partnerships establish prevention in settings of high turnover

Back

Factors contributing to infectious disease emergence

Front

host agent environment

Back

U=U

Front

Undetectable = Untransmittable

Back

Who does CDC recommend should get HPV shot

Front

age 11 or 12 young women thru 26 young men thru 21 MSM and trans thru 26 FDA approved for ages 9 to 45

Back

Scabies

Front

mite that burrows in skin and lays eggs spread thru sex or in close conditions Can survive on fomites

Back

Transmission efficiency

Front

B probability of transmission varies over course of infection and other factors viral load, cofactors, treatment HIV very dependent on viral load

Back

Dendritic sexual networks

Front

many sexual networks form long chains most populations have mostly diads core group not observed, but transmission still likely

Back

Geodesic distance

Front

number of links on the shortest path between two nodes

Back

Co factors required for HPV to lead to cervical cancer

Front

smoking age over 30 infection with multiple strains immune suppression

Back

B for STD

Front

average probability of transmission per sexual partner Per act can differ i.e. HIV

Back

Reproductive number

Front

average number of secondary cases generated by one primary case

Back

Core group concept

Front

postulates all epidemic and endemic transmission of STI sustained by small subset of population high rates concurrent relationships large number or sex links within core subgroups sexual bridges to low risk core groups have R0 greater than 1

Back

Transmission dynamics of STI

Front

Only a fraction of community is at risk Heterogeneity in risk Persistent carrier states affect prevention and control Little to no immunity Variability in transmission over course of infection

Back

partner acquisition rate STI

Front

c many STI have minimum rate or year to sustain STI transmission problem is people are not randomly mixed- need to consider networks

Back

Can HPV cause anal and penile cancer?

Front

Yes More common in MSM

Back

Emerging infectious disease

Front

newly identified and previously unknown infectious agents that cause public health problems either locally or internationally

Back

Sexual transmission of HPV

Front

sexual intercourse higher with anal genital-genital oral-genital manual-genital

Back

C for STD

Front

average number of sexual partnerships formed per unit time

Back

STI Epidemic Phases

Front

phase 1- growth phase 2- hyper endemic phase 3- decline phase 4- endemic

Back

Interventions to impact duration of infectiousness for STI

Front

public health active case finding improve access to care try to shorten delay between infection to care to treatment such as EPT

Back

Is HPV a necessary cause for cervical cancer

Front

Yes

Back

D for STD

Front

average duration of infectiousness of an infectious person

Back

HPV life cycle

Front

long incubation many will clear spontaneously Can take years Initial Continuing/ CIN1 CIN 2/3 Cervical Cancer

Back

Nodes

Front

a person in a network

Back

HPV vaccine

Front

Gardasil nonavalent vaccine for oncogenic strains

Back

CIN

Front

cervical intraepithelial neoplasia Abnormal cells in cervix from HPV Stage refers to size of growth of cells

Back

Connected component

Front

a subgroup in which all nodes have a link to at least 1 other node, and no node is connected to a member of any other component in the network

Back

Links or Edges

Front

a sexual relationship in a network

Back

Parasitic STI

Front

Trichomoniasis Scabies Pediculosis pubis/ crabs

Back

Agent in reemerging disease

Front

natural evolution of pathogenic agents such as adaptation and change developing resistance to drugs from antibiotic use and abuse, or overuse in agriculture

Back

Serial monogamy

Front

No overlap between partners

Back

Interventions to impact transmission efficiency,beta, for STD

Front

increase condom use reduce risk sexual practices and other behaviors reduce cofactors that increase infectivity suppressive chemotherapy

Back

Phase 1 sti epidemics

Front

Growth Focus on high risk populations targeted outreach implement screening and treatment programs

Back

Fragility of a network

Front

determined by the number of links that keep a nodes in a component connected

Back

Embedded concurrency

Front

a partnership entirely embedded in another

Back

STI control

Front

Presence of 1 STI increases risk of getting another Treating 1 can impact outcome of another Opportunity to control more than 1 at once

Back

Non sexual transmission of HPV

Front

Mother to child: rare Fomites : hypothesized

Back

Section 3

(50 cards)

Ebola Viral load

Front

transmission depends on viral load and symptoms initially low load and low transmissibility As viral load increases, people become more infectious and symptomatic Based on host and source fluid

Back

Adverse events zika

Front

microcephaly of babies otherwise mild illness

Back

Clinical management for ebola

Front

prophylactic antibiotics fluid replacement electrolyte replacement management of pain,nausea,agitation nutrition social support safe burial

Back

Geographic disparities in gonorrhea

Front

high in bible belt and alaska

Back

Surveillance tasks for ebola

Front

screening isolation contact tracing facility based

Back

Active surveillance

Front

following all contacts of cases

Back

Challenges with managing emerging disease

Front

surveillance gaps limited capacity for lab testing, especially novel pathogens delay in reporting insufficient preparedness for control

Back

important strains of ebola

Front

zaire and sudan majority of outbreaks

Back

Transmission of gonorrhea

Front

transmitted through vaginal oral and anal sex in women more common in cervix and urethra 5-10% in pharynx rectum vertical- passing through birth canal

Back

Complications with gonorrhea

Front

PID swelling of testes and epididymis

Back

Incubation period dengue

Front

3-14 days

Back

Political context and ebola

Front

post conflict infrastructure government mistrust health worker shortages weak health systems limited WASH porous borders

Back

Transmission of zika

Front

mosquito Sex Blood

Back

Natural Reservoir of ebola

Front

fruit bats

Back

Reproductive number of zika

Front

Can vary between 1.4 and 6.6

Back

Who is most at risk for ebola

Front

caregivers health workers transport workers morticians

Back

E Coli

Front

Reemerging infectious disease live in intestines of cows killed by cooking. in US can get not well done get sick from toxins from ecoli going into blood stream

Back

Febrile phase dengue

Front

0-6 days high viremia

Back

Ebola testing

Front

very sensitive but not specific doesnt miss people, but get lots of false positives need safe transport of sample

Back

Vector in reemerging disease

Front

Resistance to pesticides

Back

Host in reemerging disease

Front

human demographic change most of the driving force population growth interaction with new environments mass migration by natural or social causes human behavior change human susceptibility to infection poverty and social unrest

Back

Symptoms of gonorrhea

Front

most often none (50% women, 10% men) pain with urination (mostly men) discharge swollen testes lower stomach pain pain in sex rectal soreness,itching,discharge,pain

Back

passive surveillance

Front

hotlines reports by community leaders medical referrals case logs

Back

Solutions to handle emerging disease

Front

GIS to monitor environmental changes that influence emergence improved diagnostics new vaccines internet based information tech to improve reporting, facilitate communication, inform

Back

Clinical course of dengue

Front

Febrile phase Critical phase Recovery phase

Back

Emerging vector borne disease

Front

dengue zika

Back

Contact tracing for ebola

Front

direct- caring indirect- in same home funeral attendance

Back

SARS

Front

corona virus emerged in china spread because of travel

Back

Zika virus

Front

single stranded RNA

Back

Managing emerging diseases

Front

surveillance at national, regional, global level epi, labs, ecologically investigation and early control implement prevention measures

Back

Natural host of zika

Front

monkeys

Back

What has increased likelihood of ebola infections today

Front

deforestation population expansion human to human transmission

Back

Direct transmission of ebola

Front

eating bats or fruit with bat saliva

Back

Critical phase dengue

Front

potential shock, bleeding, organ impairment rising IGG capillary leakage day 4-6

Back

Environment in reemerging disease

Front

economic development and land use (urbanization, deforestation) Humans in closer contact with reservoir and vector Climate change Greater rainfall and drought, increased vector population, change in migration Technology agrobusiness

Back

Dengue symptoms

Front

asymptomatic to mild for 80% Severe in 5% vomiting fever rash headache

Back

Prevalence of Dengue

Front

present in 124 countries annually 70-100k infections 2M severe forms, mostly children approximately 21k deaths

Back

Components of outbreak response framework

Front

alert system testing clinical care health promotion screening

Back

incubation period of ebola

Front

2-21 days

Back

Treatment of dengue

Front

no specific treatment care of symptoms

Back

Speed and ease of travel with reemerging disease

Front

travel of vector and animal human travel

Back

Growth of megacities and emerging disease

Front

large population in equatorial areas with high infection transmission poor infrastructure lack of access

Back

Gonorrhea as a reemerging infectious disease

Front

increasing incidence and public health concern higher rates transmission of antibiotic resistant strains for every diagnosed case, probably 1 or more incident

Back

Indirect transmission of ebola

Front

eating infected animals can survive on fomites for hours can survive on external body fluids for days can survive in dead bodies for months

Back

health promotion and ebola

Front

lacking educate the population

Back

Antibiotics and gonorrhea

Front

now ceftriaxone and azithromicin recommended resistant to many others when prevalence of resistance is greater than 5% in surveillance, recommendations are changed

Back

Recovery phase dengue

Front

rising IGG day 3-10

Back

Transmission of dengue

Front

single bite in a period of high viremia in an infected human pre infectious period in mosquito is 8 to 10 days mosquito infected for life

Back

Ebola pathophysiology

Front

immune system gets deregulated get inflammation and vascular leaking

Back

Vector of zika

Front

aedes aegypti

Back

Section 4

(50 cards)

Inactivated vaccines

Front

whole virus or bacteria killed with heat or chemicals extracted or purified proteins used today. are technically subunit virus capsid proteins or polysaccharides from walls give response conjugate can be used to boost response

Back

Subunit vaccines types

Front

recombinant vaccines vector vaccines

Back

toxoid

Front

inactivated toxin used in a vaccine

Back

Population vaccine strategies

Front

mass vaccination ring vaccination

Back

long lasting vaccines

Front

gives lifelong protection

Back

Recombinant vaccines

Front

type of subunit vaccine that removes essential genes and inserts into another genome to produce antigen

Back

Measles vaccine

Front

recommend 2 doses: 1st at 12- 15 months 2nd at age 4-6 97% effective LAIV

Back

Vector vaccine

Front

type of subunit vaccine. extract and insert gene coding for antigen in a live vector it is a carrier expressing foreign gene

Back

Vaccine effectiveness

Front

estimate of a vaccines protective effect in the real world includes general population influenced by individual and herd immunity Calculated from observational study compare against unvaccinated calculation depends on study design

Back

Vaccinology

Front

science of developing vaccines to prevent disease

Back

Weakness of inactivated vaccine

Front

response is humoral only several boosters

Back

monovalent

Front

also univalent vaccine designed to immunize against a single antigen or single microorganism

Back

broad immunity vaccines

Front

protects against multiple strains

Back

Better approach to ebola outbreak

Front

rapid response population engagement proactive contact tracing more lab resources vaccine wash MEURI treatment Research PALM

Back

early viral vaccines developed

Front

1930 to 1950 yellow fever and flu

Back

Limitations of live vaccines

Front

tend to be efficatious but safety concern for immunosuppressed and requires cold chain

Back

vaccine efficacy

Front

reduction in the incidence of disease among people who received a vaccine compared to the incidence in unvaccinated people calculated in RCT represents best case controlled scenarios less generalizable made to maximize internal validity

Back

Attenuated

Front

an organism that is non pathogenic but remains immunogenic lab culture bacterial, genetic manipulation

Back

Stable vaccines

Front

does not require special handling

Back

First versions of vaccines

Front

variolation smallpox scabs or fluids scratched into skin produced milder disease than naturally acquired smallpox

Back

Things to consider with building clinics for ebola

Front

flow cross contamination supply access

Back

Mass vaccination

Front

administration of vaccine to large population in shor time

Back

Gardasil 9

Front

nonavalent vaccine against HPV

Back

vaccines developed today

Front

chickenpox HPV shingles

Back

Vaccine

Front

any biologically derived substance that elicits a protective response when administered to a susceptible host contains an agent that resembles an org, usually from weakened or killed forms of the microbe

Back

multivalent

Front

a vaccine designed to immunize against two or more strains of the same organism

Back

Examples of live vaccines

Front

Measles

Back

Ring Vacciation

Front

vaccination of susceptible individuals in a prescribed area around an outbreak contacts of index case make buffer of immune people to prevent spread used to control smallpox

Back

Conjugate

Front

a polysaccharide used to enhance immunogenicity makes molecule bigger to identify antigen

Back

strengths of inactivated vaccines

Front

fewer side effects less stringent handling

Back

Live attenuated vaccines

Front

Live pathogen, but weakened. May cause minor illness in rare cases. must replicate in host to elicit response produces humoral and cell mediated immunity

Back

drawback of mass vaccination

Front

adverse events more noticeable

Back

MEURI

Front

monitored emergency use of unregistered and investigational interventions expanded access treatments that not proven effective, not possible to study rn, data of some support , informed consent, well followed treatment

Back

Can vaccines cross react?

Front

yes administer separately to get best response

Back

When are vaccine effectiveness estimates valid

Front

if groups have comparable susceptibility to infection similar exposure risk equal risk of being diagnosed

Back

benefit of mass vaccination

Front

rapid increase in herd immunity

Back

Who introduced variolation to europe

Front

Lady Mary Wortley Montague 1700s wife of english ambassador of turkey had kids undergo variolation, led trials on prisoners

Back

age and vaccines

Front

live vaccines for children over age 2 years for flu

Back

Hep B, flu vaccines developed

Front

1970 to 1990

Back

polio, MMR vaccine developed

Front

1950 to 1970

Back

Critical vaccine threshold calculation

Front

1- 1/Ro missing imperfect vaccines and non random mixing

Back

Critical vaccine threshold

Front

with increasing reproductive number, necessary effort to contain disease isnt linear need high vaccine coverage high benefit if done have herd immunity

Back

Simple vaccine administration

Front

single dose ideally

Back

Ideal vaccine characteristics

Front

Immunogenic long lasting safe offer broad immunity stable administered simply affordable

Back

Early bacterial vaccines developed

Front

1910 to 1930

Back

Adjuvants

Front

agents added to vaccines to modify and boost the immune response and provide longer lasting protection can prevent clearance of antigen to improve recognition improve delivery of antigen to lymphoid direct immune resposne

Back

immunogenic vaccines

Front

produces good immune response that protects against reinfection

Back

PALM

Front

RCT of ebola trans epidemic

Back

Variolation

Front

an early method of vaccination using infected material from a patient in china, india, middle east

Back

Safe vaccine

Front

minimal adverse effects no or mild disease doesnt increase risk of other diseases

Back

Section 5

(50 cards)

How long does it take lyme to be transmitted

Front

36-48 hours

Back

how is attack rate expressed

Front

percentage

Back

When is lyme most likely the cause of facial palsy?

Front

april-october with headache with fever no history of herpetic lesions bilateral nerve 7 involvement in endemic areas

Back

Neuroborreliosis

Front

facial palsy from lyme disease

Back

Mathematical models

Front

explicit mathematical description of the simplified dynamics of a system Not perfect representations of the real world approximate real world but permit thought experiments that are otherwise impossible

Back

Rule of 7 for low risk of lyme meningitis (not lyme)

Front

less than 7 days of headache less than 70% of mononuclear cells in CSF no cranial nerve 7 involvement

Back

were pandemics more common before the 20th century?

Front

no

Back

why do lumbar puncture with lyme?

Front

lyme disease and lyme meningitis both have headache lyme meningitis needs IV antibiotics for at least 2 weeks

Back

how do structured networks influence speed of disease spread

Front

slow down transmission

Back

Treatment of lyme disease

Front

under age 8 amoxicillin over 8 doxy treatment 14-21 days of anx for most cases 28 days for arthritis

Back

Early Disseminated Lyme Disease

Front

weeks to months neuroborreliosis meningitis and cranial neuritis carditis

Back

what are 4 properties of flu that allow it to rapidly evolve and cause pandemics

Front

low proofreading antigenetic shift antigenetic drift non human reservoirs and mixing vessels

Back

When is lyme most common

Front

March to december

Back

Stages of Lyme

Front

Early localized early disseminated late

Back

Aseptic meningitis

Front

due to enterovirus no direct treatment, just symptomatic care

Back

When is meningitis due to lyme?

Front

Prevalence of infections that cause meningitis almost identical at same time Lyme treated with antibiotics aseptic doesnt have treatment

Back

Why doesnt the BASIC reproductive number not apply to an established epidemic

Front

not a fully susceptible pop. Use Rt

Back

Late stage lyme disease

Front

months to years arthritis

Back

Key assumption for compartmental models

Front

population is homogenous in each compartment

Back

Primary compartmental model imputs

Front

parameters governing rules for moving between compartments

Back

Are models useful?

Front

They are all wrong but some are useful Based on assumptions

Back

How fast is headache for bacterial meningitis

Front

immediate, die quickly

Back

Early Localized Lyme Disease

Front

Weeks flu like illness single EM rash

Back

Reservoir of lyme disease

Front

deer tick primarily live on white footed mice

Back

Lyme disease parasite

Front

borrelia burgdorferi

Back

When does an epidemic peak

Front

when the proportion of people who are susceptible is equal to R0 or when di/dt=0 or when R(s/N)=1

Back

Can lambda change

Front

yes, number of people infected changes over time

Back

Diagnosis of lyme disease

Front

Presence of EM rash Two tier serology First is sensitive, second is specific

Back

1st Tier lyme test

Front

ELISA 100% sensitivity Identifies all cases

Back

Where does Lyme mostly occur

Front

north east and upper midwest This is where these ticks live Cases outside this range visited northeast or midwest

Back

How many cases of lyme have erythema migrans rash

Front

27%

Back

what percent of kids with lyme have meningitis?

Front

10%

Back

lyme is responsible for what percent of craniel nerve 7 palsy in endemic areas?

Front

50%

Back

Types of mathematical models

Front

compartmental network agent based

Back

Agent based model

Front

represent individuals in the system

Back

Key SIR model assumptions

Front

population is fixed latency period is zero infectious period = disease duration after recovery, people are immune people homogenous in compartments infection only arises from infected people

Back

Unhelpful predictors of meningitis

Front

history to tick bite EM rash place or residence

Back

Predictors that help determine if lyme meningitis

Front

seasonality duration of symptoms cranial neuropathy % mononuclear cells in CSF

Back

When is it better to calculate IR than CI

Front

Variable time dynamic population

Back

Lyme meningitis onset

Front

over period of time

Back

Components of modeling and policy making

Front

Available data scientific understanding scientific insight data collection policy advice and question Build, adapt, fit

Back

what percent of kids with lyme associated nerve 7 palsy have meningitis?

Front

68%

Back

Modeling and policy making in public health

Front

questions define purpose model design based on data and current understanding Validation shows further adaptation needed

Back

Can Lyme be detected in blood right away?

Front

No Symptoms have to be present for at least 2 weeks

Back

Compartmental models

Front

divide population into compartments based on infectious states and other variables state of system is defined by number of people in compartments

Back

2nd tier lyme test

Front

Western blot Confirmatory positive with 2 of 3 IGM bands or 5 of 10 IGG bands Highly specific with few false positives

Back

is TB solely caused by m tuberculosis bacteria?

Front

No

Back

Is lyme EM rash diagnostic?

Front

Yes

Back

When are mathematical models helpful

Front

determine plausibility of epi explanations of disease transmission and prevention improve understanding of dynamics in a population predict impact of changes

Back

Will a reproductive number in a fully susceptible population be higher or lower to that with some immunity?

Front

Higher

Back

Section 6

(50 cards)

Is western blot highly sensitive

Front

no

Back

vaccine effectiveness applies to what validity

Front

external

Back

vaccine efficacy applies to what validity

Front

internal

Back

3 sets of parameters for agent based modeling

Front

traits behaviors/interactions environment

Back

Should ebola rapid test be sensitive or specific

Front

Sensitive so that it can detect all cases

Back

Do adjuvants prevent clearing of antigen by immune system

Front

Yes

Back

Common network types

Front

random lattice small world spatial scale free

Back

sociometric network studies

Front

recruit multiple people and try to match partners and form connections

Back

Reproductive number calculation

Front

risk of transmission per contact * number of susceptible contacts per time * duration of infectiousness BCD

Back

Why do assumptions required for calculating R0 for STI differ from other diseases

Front

Not all completely susceptible Not homogenous population STI exposure is not random

Back

Lattice networks

Front

everyone has 4 neighbors node degree is 4 structure reduces severity and extends epidemic

Back

prevalence

Front

number of cases divided by number in total population

Back

What measure of association is ideal for STI

Front

incidence

Back

L

Front

total number of links in a network

Back

Why do vaccinated and unvaccinated groups need to have comparable susceptibility and risk of exposure for vaccine effectiveness to be valid

Front

RR is unadjusted and may be susceptible to confounding

Back

Which physical symptom indicates primary syphilis infections

Front

chancre sore

Back

Cumulative incidence

Front

number of new cases divided by number initially at risk

Back

Odds ratio

Front

ad/bc

Back

Challenges with network studies

Front

missing data missing relationships between people may not capture all missing people infections not picked up

Back

Spatial network

Front

people distributed in space and connected based on geography

Back

Relative risk

Front

[a/(a+b)]/[c/(c+d)]

Back

Agent based models

Front

similar to network based models but allow for more heterogeneity agents are people but interact to influence disease states can also impact behavior

Back

Two obstacles preventing elimination of TB

Front

MXR No vaccine

Back

Does STI transmission occur more rapidly over fragile sexual networks

Front

No

Back

Random networks

Front

random mixing give rise to most severe and fast epidemics, highest peaks

Back

Is the primary input of SIR the number of people who immigrate into the population

Front

No

Back

Is dengue fever only active during outbreaks?

Front

No, it is endemic in several places

Back

Reproductive number calculation for STI

Front

av probability of transmission per sex partner * Av number of partners per time * Av duration of infectiousness of an infected person

Back

Small world network

Front

see a lot of people have close neighbors then a handful have long distance connections generally small, uncertain epidemics cut off from pop represent long range connections which impact severity of epidemic

Back

In SIR is infectious period same length as latent period

Front

Nope

Back

Attack rate

Front

number of new cases divided by number susceptible

Back

Adjacency matrices

Front

use to describe connections within a population in most ID are symmetric and undirected

Back

Egocentric network studies

Front

recruit and ask who connected to and network based on nodes recruited- dont expand upon partners easy but miss data

Back

How did host factors contribute to emergence of ebola in west africs in 2014

Front

porous borders mobility health work shortages mistrust of government poor santiation

Back

Degree

Front

the number of connection each note has

Back

Scale free network

Front

more severe outbrekas number of connections are exponential. A handful have large number of connections

Back

What are two host traits that contribute to the development of emerging disease

Front

human demographic changes speed and ease of travel

Back

Node degree distribution

Front

average number of connections per individual per time step also called average node degree distribution higher distribution has more transmission

Back

a

Front

number of elements in the full adjacency matrix

Back

Agent based model limitations

Front

requires large amount of info about disease process and human behavior assumptions make inference and sensitivity analysis hard structural assumptions hard to communicate and replicate hard to generalize

Back

Can someone get HPV without having sex

Front

Yup

Back

Degree distribution for circle

Front

1 line

Back

Network and agent based models

Front

explicity represent individuals in a population state of system represented by people behavior and status and their contacts

Back

Degree distribution

Front

distribution of all of the individual node degrees tend to be highly positively skewed in sex networks

Back

I

Front

the infected people to contact

Back

What are two characteristics of gonorrhea that contribute to its classification as reemerging

Front

widespread antibiotic resistance spread thru most sexually active individuals

Back

Are STIS usually symptomatic?

Front

Nah

Back

Why does infection with HPV not guarantee development of cervical cancer

Front

Not all strains are oncogenic Many people naturally clear infection Some people dont have other associated factors

Back

Can STI be transmitted via fomite?

Front

yes, HPV

Back

Model inputs of network and agent based models

Front

natural disease history per contact infection probability contact distribution movement

Back

Section 7

(16 cards)

lambda calculation

Front

BCI

Back

Specificity

Front

d/b+d

Back

average node degree calculation

Front

2L/ N or 1/N times a

Back

Vaccine effectiveness in outbreak

Front

1- Attack rate in vac/ attack rate in unvac

Back

Sensitivity

Front

a/a+c

Back

Case fatality rate

Front

deaths / cases

Back

Vaccine effectiveness in case control

Front

1-OR

Back

Reproductive number in SIR

Front

lambda * 1/gamma

Back

gamma calculation

Front

1/D

Back

prevalence ratio

Front

prevalence in vaccinated over prevalence in unvaccinated

Back

Vaccine effectiveness in cross sectional study

Front

1- prevalence in vaccinated/ prevalence in unvaccinated

Back

Reproductive number through an outbreak

Front

R= Ro*S/N

Back

critical vaccine threshold

Front

1- 1/Ro

Back

Vaccine effectiveness in prospective cohort

Front

1- hazard ratio 1- risk ratio 1- CI vac/CI unvac

Back

incidence rate

Front

number of new cases/ av population at risk x time

Back

vaccine efficacy calculation

Front

1-RR or Incidence in unvaccinated minus incidence in vaccinated all divided by incidence in unvaccinated times 100

Back