a unit of genetic function found in bacteria and phages, consisting of a promoter, an operator, and a coordinately regulated cluster of genes whose products function in a common pathway
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transcription initiation complex
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The part of a gene's promoter where synthesis of the gene's RNA transcript begins.
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general transcription factors
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one of a set of eukaryotic proteins that are typically required for the synthesis of mRNA
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genomic imprinting
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a phenomenon in which expression of an allele in offspring depends on whether the allele is inherited from the male or female parent
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morphogenesis
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the development of body shape and organization
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operator
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in bacterial DNA, a sequence of nucelotides near the start of an operon to which an active repressor can attach; binding of the repressor prevents RNA polymerase from attaching to the promoter and transcribing the genes of the operon
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proteasome
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a giant protein complex that recognizes and destroys proteins tagged for elimination by the small protein ubiquitin
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repressor
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a protein that inhibits gene transcription. in prokaryotes, they bind to the DNA in or near the promoter; in eukaryotes, they may bind to control elements within enhancers, to activators, or to other proteins in a way that blocks activators from binding to DNA
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regulatory gene
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a gene that codes for a protein, such as a repressor, that controls the transcription of another gene or group of genes
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dna methylation
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the addition of methyl groups (—CH3) to bases of DNA after DNA synthesis; may serve as a long-term control of gene expression.
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cell differentiation
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the structural and functional divergence of cells as they become specialized during a multicellular organism's development; depends on the control of gene expression
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cytoplasmic determinant
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A maternal substance, such as a protein or RNA, that when placed into an egg influences the course of early development by regulating the expression of genes that affect the developmental fate of cells.
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epigenetic inheritance
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inheritance of traits transmitted by mechanisms not directly involving the nucleotide sequence of a genome
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repressible enzymes
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generally function in anabolic pathways; synthesize essential end products from raw materials (precursors, enzymes)
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regulation of a metabolic pathway
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in the pathway for tryptophan synthesis, an abundance of tryptophan can both A. inhibit the activity of the first enztme in the path way (feedback inhibition), rapid response, and B. repress expression of the genes encoding all subunits of the enzymes in the pathway, a longer-term response
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homeotic gene
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any of the master regulatory genes that control placement and spatial organization of body parts in animals, plants, and fungi by controlling the developmental fate of groups of cells
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cyclic amp (cAMP)
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cyclic adenosine monophosphate, a ring-shaped molecule made from ATP that is a common intracellular signaling molecule (second messenger) in eukaryotic cells. it is also a regulator of some bacterial operons
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specific transcription factors
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proteins that bind to control elements associated with a particular gene and, once bound, either increase or decrease transcription of that gene
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activator
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a protein that binds to DNA and stimulates gene transcription. in prokaryotes, activators bind in or near the promoter; in eukaryotes, activators bind to control elements in enhancers
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alternative RNA splicing
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a type of eukaryotic gene regulation at the RNA-processing level in which different mRNA molecules are produced from the same primary transcript, depending on which RNA segments are treated as exons and which as intron
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enhancer
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a segment of eukaryotic DNA containing multiple control elements, usually located far from the gene whose transcription it regulates
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inducible enzymes
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synthesis is induced by chemical signal (ex. allolactose); an enzyme whose transcription can be stimulated by an abundance of its substrate (as opposed to repressible enzyme); usually in catabolism.
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induction
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the process in which one group of embryonic cells influences the development of another, usually by causing changes in gene expression
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lactose present, repressor inactive, operon on
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histone
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protein molecule around which DNA is tightly coiled in chromatin
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histone acetylation
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the attachment of acetyl groups to certain amino acids of histone proteins; usually makes the gene more accessible for transcription
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mediator proteins
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proteins that mediate the interaction between regulatory proteins and the transcription factors
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distal control elements
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enhancers, maybe far away from a gene or even in an intron
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catabolite activator protein (CAP)
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a protein inducer that binds to the DNA in the presence of lactose and no glucose allowing transcription of lac proteins
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a eukaryotic gene and its transcript
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lactose absent, repressor active, operon off
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differential gene expression
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the expression of different sets of genes by cells with the same genome
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corepressor
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a small molecule that binds to a bacterial repressor protein and changes its shape, allowing it to switch an operon off
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RNA interference (RNAi)
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a technique used to silence the expression of selected genes; uses synthetic double stranded RNA molecules that match the sequence of a particular gene to trigger the breakdown of the gene's messenger RNA
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repressible operon
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transcription is usually on, but can be inhibited (repressed) when a specific small molecule binds allosterically to a regulatory protein (example tryptophan)
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determination
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the progressive restriction of developmental potential in which the possible fate of each cell becomes more limited as an embryo develops
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proximal control elements
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a control element that is located close to the promoter
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histone deacetylation
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the removal of acetyl groups to certain amino acids of histone proteins
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small interfering RNA (siRNA)
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a small, single-stranded RNA molecule generated by cellular machinery from a long, double stranded RNA molecule; associates with one or more proteins in a complex that can degrade or prevent translation of an mRNA with a complementary sequence; can block transcription in some cases by promoting chromatin modification
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control elements
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a segment of noncoding DNA that helps regulate transcription of a gene by binding a transcription factor. multiple control elements are present in a eukaryotic gene's enhancer
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inducible operon
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usually off, but can be stimulated (induced) when a specific small molecule interacts with a regulatory protein (example lac operon)
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microRNA (miRNA)
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a small, single-stranded RNA molecule, generated from a hairpin structure on a precursor RNA transcribed from a particular gene; associates with one or more proteins in a complex that can degrade or prevent translation of an mRNA with a complementary sequence
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inducer
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a specific small molecule that binds to a bacterial repressor protein and changes the repressor's shape so that it cannot bind to an operator, thus switching an operon on